RetrogeneDB ID: | retro_nleu_1088 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397281.1:1017037..1017693(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.63 % |
Parental protein coverage: | 50.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VVHCTVKTDSRRWELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR |
VVHCTVKTDSR..E..PPIPDA.SSKGS.VLA..GGLDTSCILVWLKE.G.DVIAYLANIGQKEDF.E.. | |
Retrocopy | VVHCTVKTDSRCREIAPPIPDAVSSKGSMVLAHRGGLDTSCILVWLKEKGHDVIAYLANIGQKEDFKEDK |
Parental | KKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGA |
KKA.KLGAKKVFI.DVSREFV.EFIWP.IQS..LYED.YLLGTS.ARPCI..KQVEI.Q.EGAK.VS.G. | |
Retrocopy | KKAWKLGAKKVFIDDVSREFV-EFIWPTIQSNTLYEDHYLLGTSVARPCISHKQVEITQQEGAKCVSCGT |
Parental | TGKGNDQVRFELSCYSLA-PQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMH |
.GKG.DQVRFEL.C.SLA.PQIKVIA.WRMPEFY...KG.NDLMEYAKQH.IPIPVT.KNPWS.DENLMH | |
Retrocopy | MGKGSDQVRFELTC-SLA<PQIKVIASWRMPEFYSWLKGLNDLMEYAKQHRIPIPVTLKNPWSTDENLMH |
Parental | ISYEAGILENPK |
ISYEAGILE..K | |
Retrocopy | ISYEAGILEKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |