RetrogeneDB ID: | retro_mluc_1058 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429791:6190526..6191150(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000023043 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSMLUG00000006066 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.91 % |
Parental protein coverage: | 76.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | PHVQVIAPWRMPEFYNRFQGRSDLMEYAKQHGIPIPVTPKS-PWSMDENLMHISYEAGILENPKNQAPPG |
P...VIA.WRMPEFYNRFQG.SDLMEY.KQHG...P..P...PWS.DENLMHISYEAGILENPKNQAPPG | |
Retrocopy | PQIEVIAAWRMPEFYNRFQGGSDLMEYTKQHGMGSP--PRT<PWSVDENLMHISYEAGILENPKNQAPPG |
Parental | LYTKTQDPAKGPNTPDILEIEFKKGVPVKVTNVKDGTTHRSSLELFVYLNE-IAGKHGVGRIDI-VENRF |
LYTKTQDPAKGPNTPD.LE.EFKKGVPVKVTNV.DGTTHR.SLELFVYL.E.IAGKHGVG.ID..VENR. | |
Retrocopy | LYTKTQDPAKGPNTPDVLENEFKKGVPVKVTNVTDGTTHRTSLELFVYLSE<IAGKHGVGCIDV<VENRL |
Parental | IGMKSRGIYETPAGTVLYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQE |
.GMK..GIY.TPAG..LYHAHL.IEAFTM.REV.KI..GLGLKFAEL.YTG.WHSPECEF.RHCIAK.QE | |
Retrocopy | MGMKPQGIYGTPAGAILYHAHLHIEAFTMGREVCKIMSGLGLKFAELGYTGVWHSPECEFARHCIAKFQE |
Parental | RVEG |
...G | |
Retrocopy | ERPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies |
retro_mluc_1058 , retro_mluc_1304,
|
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |