RetrogeneDB ID: | retro_hsap_3564 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:25023478..25024712(-) | ||
Located in intron of: | ENSG00000272053 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000220517 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSG00000130707 | ||
Aliases: | ASS1, ASS, CTLN1 | ||
Description: | argininosuccinate synthase 1 [Source:HGNC Symbol;Acc:758] |
Percent Identity: | 87.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSSKGSV-VLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFV |
MSSKGS..VLAY.GGLDTSCILVW.KEQGYDVIAYLAN.GQKEDFEEARKKALKLGAKKVFIEDV.REFV | |
Retrocopy | MSSKGSMRVLAYGGGLDTSCILVWVKEQGYDVIAYLANTGQKEDFEEARKKALKLGAKKVFIEDVIREFV |
Parental | EEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGND-QVRFELSCYSLAPQ |
EEFIWPAIQSS.LYEDRYLLGT.LARPCIA.KQVEIAQ.EG...VS.GATGKGN..QVRFEL..YSL.PQ | |
Retrocopy | EEFIWPAIQSSTLYEDRYLLGTFLARPCIASKQVEIAQQEG---VSRGATGKGNI<QVRFELTWYSLVPQ |
Parental | IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYT |
IK..APWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPW.MDENLMHISYEAGILENPKNQ.PPGLYT | |
Retrocopy | IKGTAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWNMDENLMHISYEAGILENPKNQVPPGLYT |
Parental | KTQDPAKAPNTPDILEIEFKKG-VPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMK |
KT..P.KAPNTPDILEIE.KKG.VPVKVTNV.DG.TH.TSLE.FMYLNEVA.KHGVG..DIVENRF.GMK | |
Retrocopy | KT*EPVKAPNTPDILEIELKKG<VPVKVTNVNDGSTHPTSLEFFMYLNEVADKHGVGCTDIVENRFTGMK |
Parental | SRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEG |
SRGIYETPAGTILYH.HLDI.AFTMD.EV.KIKQGLGLKFAELVYT.FWHSPECEFVRHCIAKS...V.G | |
Retrocopy | SRGIYETPAGTILYHTHLDIKAFTMDWEVCKIKQGLGLKFAELVYTAFWHSPECEFVRHCIAKS*GQVGG |
Parental | KVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLK--EYHRLQSKVTAK |
K.QVSVLKG.VYILG.ESPLS.YNEE.VSMNV.GDYEP.DATGFININSLRLK..EYHRLQSKVTAK | |
Retrocopy | KAQVSVLKGRVYILGWESPLSPYNEEPVSMNV*GDYEPIDATGFININSLRLKE*EYHRLQSKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 238 .28 RPM |
bodymap2_adrenal | 0 .96 RPM | 46 .81 RPM |
bodymap2_brain | 0 .00 RPM | 23 .44 RPM |
bodymap2_breast | 0 .12 RPM | 183 .45 RPM |
bodymap2_colon | 0 .02 RPM | 77 .38 RPM |
bodymap2_heart | 0 .00 RPM | 33 .05 RPM |
bodymap2_kidney | 0 .10 RPM | 245 .71 RPM |
bodymap2_liver | 0 .32 RPM | 432 .27 RPM |
bodymap2_lung | 0 .12 RPM | 79 .76 RPM |
bodymap2_lymph_node | 0 .68 RPM | 41 .15 RPM |
bodymap2_ovary | 0 .17 RPM | 93 .22 RPM |
bodymap2_prostate | 0 .24 RPM | 119 .92 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 31 .65 RPM |
bodymap2_testis | 0 .38 RPM | 118 .38 RPM |
bodymap2_thyroid | 0 .02 RPM | 69 .49 RPM |
bodymap2_white_blood_cells | 0 .49 RPM | 0 .18 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BG876846 | 25023579 | 25024064 | 98.2 | 476 | 8 | 466 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2421 |
Gorilla gorilla | retro_ggor_2403 |
Pongo abelii | retro_pabe_2937 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .37 RPM |
CEU_NA11930 | 0 .26 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .35 RPM |
CEU_NA12751 | 0 .27 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .38 RPM |
CEU_NA12872 | 0 .11 RPM |
CEU_NA12873 | 0 .26 RPM |
FIN_HG00183 | 0 .11 RPM |
FIN_HG00277 | 0 .15 RPM |
FIN_HG00315 | 0 .14 RPM |
FIN_HG00321 | 0 .48 RPM |
FIN_HG00328 | 0 .17 RPM |
FIN_HG00338 | 0 .15 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .22 RPM |
FIN_HG00377 | 0 .10 RPM |
FIN_HG00378 | 0 .15 RPM |
GBR_HG00099 | 0 .17 RPM |
GBR_HG00111 | 0 .15 RPM |
GBR_HG00114 | 0 .18 RPM |
GBR_HG00119 | 0 .17 RPM |
GBR_HG00131 | 0 .46 RPM |
GBR_HG00133 | 0 .36 RPM |
GBR_HG00134 | 0 .17 RPM |
GBR_HG00137 | 0 .14 RPM |
GBR_HG00142 | 0 .17 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .27 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 0 .14 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .21 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .10 RPM |
TSI_NA20798 | 0 .09 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .17 RPM |
YRI_NA19093 | 0 .10 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .16 RPM |
YRI_NA19118 | 0 .06 RPM |
YRI_NA19213 | 0 .22 RPM |
YRI_NA19214 | 0 .17 RPM |
YRI_NA19223 | 0 .16 RPM |