RetrogeneDB ID: | retro_ptro_3064 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | GL393313.1:324924..326158(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPTRG00000021473 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSKEFVE |
.SSKGS.VLA.SGGLDTSCIL.WLKEQG.DVIAYLA.I.QKEDFEE.RKKA.KLGAKKVFI.DVS..FVE | |
Retrocopy | VSSKGSMVLAHSGGLDTSCILMWLKEQGHDVIAYLAKISQKEDFEEDRKKAWKLGAKKVFIDDVSRDFVE |
Parental | EFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLA-PHI |
EFIWPAIQSS.LYED.YLLGTSLARPCIA.KQVEI.Q.EG.KYVS..A.GKGND.VRFEL.C.SLA.P.I | |
Retrocopy | EFIWPAIQSSILYEDHYLLGTSLARPCIAHKQVEITQQEGTKYVSYSAMGKGNDHVRFELTC-SLA<PQI |
Parental | KVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILE-NPKNQ-APPGLY |
KVIA.WRMPEFY...KG.NDLMEYAKQH.IPIPVT.KNPWS.DENLMHISYEAGILE.NP....APPGLY | |
Retrocopy | KVIASWRMPEFYSWVKGLNDLMEYAKQHRIPIPVTLKNPWSIDENLMHISYEAGILE>NPSTI>APPGLY |
Parental | TKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMK |
.KT.D..KAPNT.DILEIEFKKGVPVKVTNVKDG.THQTS.ELFMYLNE.A.KHG.G.IDIVEN.FI.MK | |
Retrocopy | MKTKDLTKAPNTTDILEIEFKKGVPVKVTNVKDGATHQTS*ELFMYLNEAASKHGLGHIDIVENHFITMK |
Parental | SRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEG |
S.GIYETPAGTILYHAHL.I.AFTMDREVRKIK.GLGLKFAELVYTGFWHSPECEFVRH.I.KSQE.VEG | |
Retrocopy | S*GIYETPAGTILYHAHLHIQAFTMDREVRKIK*GLGLKFAELVYTGFWHSPECEFVRHYITKSQELVEG |
Parental | KVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
KVQ.SV.KGQVYILG.ESPLSLYNEELVSM.VQGD.EP.DATGFI.I.SL.LKEYH.LQS.VTAK | |
Retrocopy | KVQASVFKGQVYILGQESPLSLYNEELVSMSVQGD*EPVDATGFITISSLMLKEYHHLQSNVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 42 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 48 .83 RPM |
SRP007412_heart | 0 .00 RPM | 16 .26 RPM |
SRP007412_kidney | 0 .03 RPM | 1168 .07 RPM |
SRP007412_liver | 0 .16 RPM | 933 .12 RPM |
SRP007412_testis | 0 .00 RPM | 18 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |