RetrogeneDB ID: | retro_nleu_1381 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397291.1:16097071..16098371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RVVHCTVKTDSRRWELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEA |
RVVHC..KTDSRRW.L.PPIPDA.SSK.S.VLAY.GGLDTSCILVW.KEQGYDVIAYLAN.GQKEDFEEA | |
Retrocopy | RVVHCNLKTDSRRWKLVPPIPDARSSKDSMVLAYGGGLDTSCILVWVKEQGYDVIAYLANTGQKEDFEEA |
Parental | RKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHG |
RKKALKLGAKKVFIEDV.REFVEEFIWPAIQSS.LYEDRYLLGTSLARPCIA.KQVEIAQ.EG...VS.G | |
Retrocopy | RKKALKLGAKKVFIEDVIREFVEEFIWPAIQSSTLYEDRYLLGTSLARPCIASKQVEIAQQEG---VSRG |
Parental | ATGKGNDQVRFELSCYSLAPQIK-VIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLM |
ATGKG.D.V.FEL..YSL.PQIK.VIAPWRMPEFYNRFKGRNDLMEYAKQHGIP..VTPKNPWSMDENLM | |
Retrocopy | ATGKGSDEVLFELTRYSLVPQIK<VIAPWRMPEFYNRFKGRNDLMEYAKQHGIPNLVTPKNPWSMDENLM |
Parental | HISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKG-VPVKVTNVKDGTTHQTSLELFMYLN |
HISYEAG.LENPKNQ.PPGLYTKT..PAKAPNTPD.LEIE.KKG.VP.KVTNVKDG.THQTSLE.FMYL. | |
Retrocopy | HISYEAGNLENPKNQVPPGLYTKT*EPAKAPNTPDVLEIELKKG<VPMKVTNVKDGSTHQTSLEFFMYLS |
Parental | EVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGF |
EVA.KHGVG..DIVEN.F.GMKSRGIYET.AGTILYH.HLDIEAFTMD.EV.KIKQ.LGLKFAELVYTGF | |
Retrocopy | EVADKHGVGCTDIVENCFTGMKSRGIYETLAGTILYHTHLDIEAFTMDWEVCKIKQSLGLKFAELVYTGF |
Parental | WHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININ |
WH.PECEFVRHCIAKS...VEGK.QVSVLKGQVYIL..ES.LS.YNEE.VSMNVQ.DYEP.DATGFININ | |
Retrocopy | WHCPECEFVRHCIAKS*KQVEGKAQVSVLKGQVYILDWESSLSPYNEEPVSMNVQDDYEPIDATGFININ |
Parental | SLRLK--EYHRLQSKVTAK |
SLRLK..EYH.LQSKVT.. | |
Retrocopy | SLRLKE*EYHCLQSKVTVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |