RetrogeneDB ID: | retro_nleu_2764 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397422.1:1956869..1958162(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | RVVHCTVKTDSRRWELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQ-GYDVIAYLANIGQKEDFEE |
RVVHCTVKTD.RRWE..PPIPDAMSSKGSVVLAYSGGL.T.CILVWLK...GYD.IAYLANIGQKEDF.E | |
Retrocopy | RVVHCTVKTDPRRWEQAPPIPDAMSSKGSVVLAYSGGLATCCILVWLKNK<GYDIIAYLANIGQKEDFKE |
Parental | ARKK-ALKLGAKKVFIEDV-SREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYV |
.RKK.ALKLGAK.VFIEDV.SREFVEEFIWPAIQ.SA.YED.YLLGTSL.RP.IARKQVEIA..EGAKYV | |
Retrocopy | TRKK<ALKLGAK-VFIEDV>SREFVEEFIWPAIQFSAPYEDCYLLGTSLTRPRIARKQVEIAHWEGAKYV |
Parental | SHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDEN |
S.G.TGKG.DQV.FEL.CY.LAPQIKVIAPWRMPEFYNRFKG.NDLMEYAK.HGIP..VTPKN.WSMD.N | |
Retrocopy | SRGTTGKGSDQVQFELTCYLLAPQIKVIAPWRMPEFYNRFKGCNDLMEYAKHHGIPVLVTPKNLWSMDKN |
Parental | LMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEI-EFKKGVPVKVTNVKDGTTHQTSLELFMY |
LMHIS.EAGILENPKNQ.P.GLY.KTQDP..APNT.DIL.I...KKGVPVKVT..KDG.T.QTSLELFMY | |
Retrocopy | LMHISCEAGILENPKNQVPAGLYAKTQDP--APNTRDILKI<LVKKGVPVKVTDIKDGSTYQTSLELFMY |
Parental | LNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKI-KQGLGLKFAELVY |
LNEVAGKHGVGR.DIVENRFIGMKS.GI.E.PAGTILYHAHLDI.AFTMD.EVRKI..QGL.LKFAELVY | |
Retrocopy | LNEVAGKHGVGRPDIVENRFIGMKSGGI*EAPAGTILYHAHLDIKAFTMDWEVRKI<QQGLCLKFAELVY |
Parental | TGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFI |
TGFWHS.ECEF..HC.AKSQERVEGKVQVS..KGQVYILG.E.PLSLYNE.LVSMN.QGDYEP.DAT.FI | |
Retrocopy | TGFWHSTECEFACHCFAKSQERVEGKVQVSIFKGQVYILGLEFPLSLYNEKLVSMNMQGDYEPIDATRFI |
Parental | NINSLRLKEYHRLQSKVTAK |
NINSLRLKEYH..QSKV.AK | |
Retrocopy | NINSLRLKEYHHRQSKVIAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |