RetrogeneDB ID: | retro_ptro_2268 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:61652013..61652972(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPTRG00000021473 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.29 % |
Parental protein coverage: | 77.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPHIKVIAPWRMPEFYNRFKGRNDLME |
LARPCIA.KQ.EI.Q..GAKY.SH..TG.GN.QV.FEL.CYSLAP.IKVIAPWRMP.FYN..KGRNDLME | |
Retrocopy | LARPCIACKQMEITQWKGAKYMSHSTTGNGNNQVQFELICYSLAPQIKVIAPWRMPKFYNQLKGRNDLME |
Parental | YAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT-QDPAKAPNTPDILEIEFKKGV |
YAKQH.IPIPVTPKN.WSMDENLMHISYEAGI.ENPKNQAPPGLYTKT.QDPAKAPNTPDILEIEFKKGV | |
Retrocopy | YAKQHRIPIPVTPKNSWSMDENLMHISYEAGIPENPKNQAPPGLYTKT<QDPAKAPNTPDILEIEFKKGV |
Parental | PVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFT |
PVKVTNVKDGTTHQTSLELFMYLNEV.GK.GVG.IDI.EN.FIGMKSRGIY..PA.TILY.AHLD..AFT | |
Retrocopy | PVKVTNVKDGTTHQTSLELFMYLNEVVGKQGVGCIDIMENCFIGMKSRGIYQAPASTILYLAHLDTKAFT |
Parental | MDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYN |
MD.EVRKIKQGLGLKF.ELV.TGFW.SPECEFV.HCIAKSQE.VEGKVQVSVL.GQVYILG.ESPLSLY. | |
Retrocopy | MDQEVRKIKQGLGLKFVELVDTGFWYSPECEFVCHCIAKSQEQVEGKVQVSVLEGQVYILGQESPLSLYK |
Parental | EELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
EE.VSMN.QGDY.P.DATGFININSLRLKEYHRLQSKVTAK | |
Retrocopy | EEPVSMNAQGDYQPIDATGFININSLRLKEYHRLQSKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 42 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 48 .83 RPM |
SRP007412_heart | 0 .03 RPM | 16 .26 RPM |
SRP007412_kidney | 0 .18 RPM | 1168 .07 RPM |
SRP007412_liver | 0 .33 RPM | 933 .12 RPM |
SRP007412_testis | 0 .00 RPM | 18 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3175 |
Gorilla gorilla | retro_ggor_1346 |
Pongo abelii | retro_pabe_2637 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |