RetrogeneDB ID: | retro_nleu_220 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397261.1:43934911..43935897(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.2 % |
Parental protein coverage: | 76.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | PAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGA-TGKGNDQVRFELSCYSLAPQIKVIA |
PAIQSS...ED.YLLGTSL.RPCIA.K.VEIA..EGAKYVSHGA..GKGNDQV.FEL.CYSLA..IKVIA | |
Retrocopy | PAIQSSE--EDGYLLGTSLTRPCIACK*VEIAHEEGAKYVSHGA<LGKGNDQVWFELTCYSLAARIKVIA |
Parental | PWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENP-KNQAPPGLYTKTQD |
P.RMPEFYN.FKG..DLMEY.KQH.IPIPVTPKNP..MDENLMHISYEAGILE.P.KNQ..PGLYTKTQD | |
Retrocopy | P*RMPEFYNQFKGCSDLMEYTKQHRIPIPVTPKNP*NMDENLMHISYEAGILEDP>KNQVAPGLYTKTQD |
Parental | -PAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGI |
.PAKAPNTPDILEI.FKKGV.....NVKDGTTHQTSL..FMYLNE.AGKH.VGRIDI.EN.F.G.KSRGI | |
Retrocopy | <PAKAPNTPDILEIKFKKGV---LLNVKDGTTHQTSLAFFMYLNEIAGKHCVGRIDIMENHFMGTKSRGI |
Parental | YETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQV |
YETPAGTILYHAHLD.EAFTMD.EV.KI.QGLGLK.AELVYTGFWHSPECEFVRH.IA.SQERVE.KVQV | |
Retrocopy | YETPAGTILYHAHLDMEAFTMD*EVCKIEQGLGLKCAELVYTGFWHSPECEFVRHSIANSQERVERKVQV |
Parental | SVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSK |
S..K.QV.ILG..SPL.LYNEELVSMNV.GDYEP.DATGFININSLRLKEYH.LQSK | |
Retrocopy | SLFKDQVHILGWDSPLPLYNEELVSMNVHGDYEPIDATGFININSLRLKEYHHLQSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |