RetrogeneDB ID: | retro_nleu_1317 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397288.1:18677184..18677928(-) | ||
Located in intron of: | ENSNLEG00000016369 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.6 % |
Parental protein coverage: | 57.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RVVHCTVKTDSRRWEL-TPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEE |
RVVH...KTDSR..EL..PPIPDAM.SK.S.VLAYSGGLDTSCILVWLKEQGYD.IAYL.NIGQKEDF.. | |
Retrocopy | RVVH*AMKTDSRHQEL<APPIPDAMFSKSSMVLAYSGGLDTSCILVWLKEQGYDIIAYLDNIGQKEDFK* |
Parental | ARKKALKLGAKKVFIEDVSREFVE-EFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVS |
A.KKAL.LG.KKVFIEDVS.EFVE.EFIWPAIQSSAL.ED.YLLG.SL..PCI.RKQVEIA..EGAKYVS | |
Retrocopy | AKKKALNLGSKKVFIEDVSKEFVE>EFIWPAIQSSALCEDCYLLGPSLPGPCITRKQVEIARWEGAKYVS |
Parental | HGATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENL |
H.A.GKGN.QV.FEL.CYSLAPQIKVIAP.R.PEF.N.FKG..DLMEYA..HGIPIPVT.K.PW.MDENL | |
Retrocopy | HSAMGKGNNQVWFELTCYSLAPQIKVIAPRRIPEFHNQFKGHSDLMEYAEKHGIPIPVTLKHPWNMDENL |
Parental | MHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEI |
MH..YEAGILENPKNQAP.GLY.K.Q.PAKAPNTP.IL.I | |
Retrocopy | MHNNYEAGILENPKNQAPSGLYMKIQEPAKAPNTPNILKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |