RetrogeneDB ID: | retro_pabe_3197 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7_random:3684919..3685767(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 82.31 % |
Parental protein coverage: | 77.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 13 |
Parental | DFEE-ARKKALKLG-AKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEG |
DFEE.ARKKA.KLG..KKVF.E.VSREF.EEFIWPAI.SSALYEDRYLLGTSL.RPCIARKQVEIA..EG | |
Retrocopy | DFEE<ARKKAPKLG<TKKVFTEGVSREFAEEFIWPAI*SSALYEDRYLLGTSLTRPCIARKQVEIAHGEG |
Parental | AKYVSHGA-TGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLM-EYAKQHGIPIPVTPKNP |
AK.VSHGA..GKGN.QV.FEL.CYSLAPQIKVI.PWRMPEFYN.FKG..DL..EY.KQH.IPIPVTPKNP | |
Retrocopy | AK*VSHGA<LGKGNNQVWFELTCYSLAPQIKVIVPWRMPEFYNQFKGCSDLI>EYTKQHRIPIPVTPKNP |
Parental | WSMDENLMHISYE-AGILENP-KNQAPPG-LYTKTQDPAKAP-NTPDILEIEFKKGVPVKVTNVKDGTTH |
W.MDENLMHISYE.AGILE.P.KNQAPPG.L....QDPAKAP.NTPDILEIEFKKGV..KVTNVKDGTTH | |
Retrocopy | WNMDENLMHISYE<AGILEDP>KNQAPPGSLHEDPQDPAKAP>NTPDILEIEFKKGVLLKVTNVKDGTTH |
Parental | -QTS-LELFMYLNEVAGK-HGVG-RIDIVENRFIGMKSRGIYETPAGTILYH-AHLDIE-AFTMDREVRK |
..TS.L.LFMYLNEVAGK.H.VG.RI..VENRFIGMKSRGIYETPAGTILYH.AHLDI..AFTMD.EVRK | |
Retrocopy | >RTS>LALFMYLNEVAGK>HSVG>RINTVENRFIGMKSRGIYETPAGTILYH>AHLDID>AFTMDWEVRK |
Parental | IKQGLGLKFAELVY |
IKQGL.LK.AELVY | |
Retrocopy | IKQGLHLKCAELVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 673 .87 RPM |
SRP007412_liver | 0 .00 RPM | 332 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |