RetrogeneDB ID: | retro_pabe_834 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:34043304..34044266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 87.12 % |
Parental protein coverage: | 89.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIG-QKEDFEEARKK-ALKLGAKKVFIEDVSREF |
MSSKGS.VLAYSG.LDTSCILV..KEQGYDVIAYLAN.G.QKEDF.E.RKK.ALKLGAKKVFIEDVSR.F | |
Retrocopy | MSSKGSLVLAYSGSLDTSCILV*PKEQGYDVIAYLANVG>QKEDFRETRKK<ALKLGAKKVFIEDVSRGF |
Parental | VEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCYSLAPQ |
VEEFIWPAIQ.S.LYED.YLLGTSL.RPCIA.KQVEIA..EGAKYVSHGATGKG.DQV.FEL.CYSLAPQ | |
Retrocopy | VEEFIWPAIQFSTLYEDGYLLGTSLTRPCIAGKQVEIAHWEGAKYVSHGATGKGSDQVQFELICYSLAPQ |
Parental | IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYT |
IKVIAPWRMPEFYNRFKGRNDL.EYAK.HGIPI.VTPKN.WSMD.NLMHISYEAGILENPKNQAPPGLY. | |
Retrocopy | IKVIAPWRMPEFYNRFKGRNDLVEYAKHHGIPILVTPKNLWSMDKNLMHISYEAGILENPKNQAPPGLYA |
Parental | KTQDPAKAPNTPDILEIEF-KKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMK |
KTQDP..APNTPDILEIE..KKGVPVKVT..KDG.T.QTSLE..MYLNEVAGKH.VGR.DIVENRFIGMK | |
Retrocopy | KTQDP--APNTPDILEIEL<KKGVPVKVTDIKDGFTYQTSLEHLMYLNEVAGKHCVGRTDIVENRFIGMK |
Parental | SRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
SRGI.E.PAGTILYHAHLDI.AFTMD.EVRKIKQGLGLKFAELVYT | |
Retrocopy | SRGI*EAPAGTILYHAHLDIKAFTMDWEVRKIKQGLGLKFAELVYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .80 RPM | 673 .87 RPM |
SRP007412_liver | 0 .15 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_985 |
Pan troglodytes | retro_ptro_762 |
Gorilla gorilla | retro_ggor_787 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |