RetrogeneDB ID: | retro_pabe_3522 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9_random:6750220..6751198(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 82.23 % |
Parental protein coverage: | 89.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSSKGSVVLAYSG-GLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFV |
MSSKGS.VLAYSG.GLDTSCILVWLKEQGYD..AYLANIGQKEDFEEARKKALKLGAKKVFIED.SREFV | |
Retrocopy | MSSKGSMVLAYSG<GLDTSCILVWLKEQGYDISAYLANIGQKEDFEEARKKALKLGAKKVFIEDASREFV |
Parental | EEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCYSLA-PQ |
EEFIWPAIQS.ALYED..LLGTSLARPCIA.KQ.EIAQQEGAKYVSHGAT.KG.DQ..FEL.CYSLA.PQ | |
Retrocopy | EEFIWPAIQSRALYEDHCLLGTSLARPCIACKQMEIAQQEGAKYVSHGATEKGTDQF*FELNCYSLA>PQ |
Parental | IKVIAPWRMPEFYNRFKGRNDLM-EYAK-QHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGL |
IKVIAPWRMP...N.FK..NDLM.EY.K.QHGIPI.VT.K.PWSM..NLMHIS.EAGILE.PKN..PPGL | |
Retrocopy | IKVIAPWRMPKIHNWFKAFNDLMEEYTK>QHGIPILVTSKKPWSMEQNLMHISCEAGILEYPKN*VPPGL |
Parental | YTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLE----LFMYLNEVAGKHGV-GRIDIVEN |
YTKTQD.AKA.NT.DIL..EFKKGVPVKVTNVKDGTTH.TSL.....LFMYLNEV..K.G..G..DIVEN | |
Retrocopy | YTKTQDLAKALNTLDIL--EFKKGVPVKVTNVKDGTTHKTSLAPWYLLFMYLNEVTDKQGM<GHTDIVEN |
Parental | RFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
.FIGMKS.GI.ETPAGTI.YHAHLDIEAFTMD.EV.KIKQGLGL.FAELVYT | |
Retrocopy | CFIGMKSQGIWETPAGTIIYHAHLDIEAFTMDLEVCKIKQGLGLEFAELVYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 673 .87 RPM |
SRP007412_liver | 0 .03 RPM | 332 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |