RetrogeneDB ID: | retro_pabe_3069 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:63244587..63245553(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 86.5 % |
Parental protein coverage: | 89.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVE |
.SSKGSVVLAY.G.LDTSCILV.LKEQGYDVIAYLANIGQKEDFEEARKKA.KLG.K.VF.E.VSREF.E | |
Retrocopy | VSSKGSVVLAYVGSLDTSCILVCLKEQGYDVIAYLANIGQKEDFEEARKKAPKLGTKNVFTEGVSREFAE |
Parental | EFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGA-TGKGNDQVRFELSCYSLAPQI |
EFIWPAI.SSALYEDRYLLGTSL..P.IARKQVEIA..EGAK.VSHGA..GKGNDQV.FE..CYSLAPQI | |
Retrocopy | EFIWPAI*SSALYEDRYLLGTSLTWPSIARKQVEIAHGEGAK*VSHGA<LGKGNDQVWFEFTCYSLAPQI |
Parental | KVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENP-KNQAPPGLYT |
KVI.PWRMPEFYN.FKG..DLMEY.KQH.IPIPVTPKNPW.MDENLMHISYEAGILE.P.KNQAPPGLYT | |
Retrocopy | KVIVPWRMPEFYNQFKGCSDLMEYTKQHRIPIPVTPKNPWNMDENLMHISYEAGILEDP>KNQAPPGLYT |
Parental | KTQD-PAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMK |
KTQD.PAKAPNTPDILEIEFKKGV..K.TNVKDGTTHQTSL.LFMYLNEVAGKH.VGRI..VENRFIGMK | |
Retrocopy | KTQD<PAKAPNTPDILEIEFKKGVLLKFTNVKDGTTHQTSLALFMYLNEVAGKHSVGRINTVENRFIGMK |
Parental | SRGIYETPAGTILYH-AHLDIEAFTMDREVRKIKQGLGLKFAELVY |
SRGIYETPAGTILYH.AHLDIEAFTMD.EVRKIKQGL.LK..ELVY | |
Retrocopy | SRGIYETPAGTILYH>AHLDIEAFTMDWEVRKIKQGLRLKCVELVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .03 RPM | 673 .87 RPM |
SRP007412_liver | 0 .00 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3824 |
Pan troglodytes | retro_ptro_2602 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |