RetrogeneDB ID: | retro_pabe_2637 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:55102822..55103603(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000015456 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 84.67 % |
Parental protein coverage: | 72.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCY |
.SREFVEEFI.PAIQSSALYED.YLLGTSLARPCIA.KQ.EI.Q..GAKYVSH..TG.GN.QV.FEL.CY | |
Retrocopy | LSREFVEEFIRPAIQSSALYEDCYLLGTSLARPCIACKQMEITQWKGAKYVSHSTTGNGNNQVQFELICY |
Parental | SLAP-QIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQA |
SLAP.QIK.I.PWRM..FYN..KG.NDLMEYAKQH.IPIPVTPKN.WSMDENLM.ISYEAGI.ENPKNQA | |
Retrocopy | SLAP>QIKAIVPWRMLKFYNQLKGHNDLMEYAKQHRIPIPVTPKNLWSMDENLMPISYEAGIPENPKNQA |
Parental | PPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENR |
PPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNE..GK.GVGRIDI.ENR | |
Retrocopy | PPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEAVGKQGVGRIDIMENR |
Parental | FIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
FIGMKSRGIY..PA.TILY.AHLD..AFTMD...RKIKQGLGLKFAELV.T | |
Retrocopy | FIGMKSRGIYQAPARTILYLAHLDTKAFTMDQKARKIKQGLGLKFAELVDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 673 .87 RPM |
SRP007412_liver | 0 .03 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3175 |
Pan troglodytes | retro_ptro_2268 |
Gorilla gorilla | retro_ggor_1346 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |