RetrogeneDB ID: | retro_pabe_2937 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:26076546..26077502(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 87.35 % |
Parental protein coverage: | 89.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVE |
MSSK...VLAY.GGLDTSCI.VW.KEQGYD.IAYLAN.GQKEDFEEARKKALKLGA.K.FIEDV.REFVE | |
Retrocopy | MSSKDAMVLAYGGGLDTSCIPVWMKEQGYDIIAYLANTGQKEDFEEARKKALKLGAEK-FIEDVIREFVE |
Parental | EFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCYSLAPQIK |
EFIWPAIQSS.LYED.YLLGT.LARPCIA.KQVEIAQQEG...VS.GATGKGNDQVRFEL..YSL.PQIK | |
Retrocopy | EFIWPAIQSSTLYEDCYLLGTFLARPCIASKQVEIAQQEG---VSRGATGKGNDQVRFELTWYSLDPQIK |
Parental | VIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKT |
VIAPWRMPEFYNRFKG.NDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQ.PPGLYTKT | |
Retrocopy | VIAPWRMPEFYNRFKGHNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQVPPGLYTKT |
Parental | QDPAKAPNTPDILEIEF-KKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSR |
..PAKAPNTPD.LEIE..KKGVPVKVTNVKDG.THQTSLE.FMYLNEVA.KHGVG..D.VEN.F.GMKSR | |
Retrocopy | *EPAKAPNTPDVLEIEL<KKGVPVKVTNVKDGSTHQTSLEFFMYLNEVADKHGVGYTDMVENCFTGMKSR |
Parental | GIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
GIYETPAGTILYH.HLDIEAFTMDREV..IKQGL.LKFAELVYT | |
Retrocopy | GIYETPAGTILYHTHLDIEAFTMDREVCQIKQGLFLKFAELVYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .36 RPM | 673 .87 RPM |
SRP007412_liver | 0 .24 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3564 |
Pan troglodytes | retro_ptro_2421 |
Gorilla gorilla | retro_ggor_2403 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |