RetrogeneDB ID: | retro_nleu_1424 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397292.1:15689905..15691156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000004101 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.16 % |
Parental protein coverage: | 95.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS |
P.PDAMSSK.SVVLAYS.GLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS | |
Retrocopy | PEPDAMSSKDSVVLAYSSGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS |
Parental | REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSL |
REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFEL.CYSL | |
Retrocopy | REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELTCYSL |
Parental | APQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPG |
A.QIKVIAPWRMPEFYNR.KGRNDLME.AKQHGI.IPVTPKNPWSMDENLMHI.YEAGILENPKNQAPPG | |
Retrocopy | AAQIKVIAPWRMPEFYNRVKGRNDLME*AKQHGITIPVTPKNPWSMDENLMHITYEAGILENPKNQAPPG |
Parental | LYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIG |
LY.KTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNE.AGKHGVGR.DIVENRFIG | |
Retrocopy | LYSKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEAAGKHGVGRVDIVENRFIG |
Parental | MKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERV |
MKSRGIYET.AGTILYHAHLD.E.FTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERV | |
Retrocopy | MKSRGIYETLAGTILYHAHLDTEDFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERV |
Parental | EGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
EGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYE.TDATGFININSLRLKEYHRLQSKVTAK | |
Retrocopy | EGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEQTDATGFININSLRLKEYHRLQSKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |