RetrogeneDB ID: | retro_nleu_1792 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397309.1:9467093..9467801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.83 % |
Parental protein coverage: | 54.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VVHCTVKTDSRRWELTPPIPDAMSSKGSVVLAYSG-GLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEA |
VVHCT.KTDSR...L.PPIPD..S.K.S.VLAYSG.GLDTSCILVWLKEQGYD.IAYLANIGQKEDFEEA | |
Retrocopy | VVHCTMKTDSRCRQLVPPIPDSTSTKASMVLAYSG<GLDTSCILVWLKEQGYDIIAYLANIGQKEDFEEA |
Parental | RKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHG |
RKKA.KLGAKKVFIED.SREFVEEFIW.AIQS.ALYED..LLGTSLARPCIA.KQ.EIAQ.EGAKYVSHG | |
Retrocopy | RKKARKLGAKKVFIEDTSREFVEEFIWLAIQSRALYEDHCLLGTSLARPCIACKQMEIAQQEGAKYVSHG |
Parental | ATGKGNDQVRFELSCYSLA-PQIKVIAPWRMP-EFYNRFKGRNDLM-EYAK-QHGIPIPVTPKNPWSMDE |
ATGKG.DQ..FEL.CYSLA.PQIKVIAPWRMP.EFYN.FK..NDLM.EY.K.QHGI.I.VT.KNP.SM.. | |
Retrocopy | ATGKGTDQF*FELTCYSLA>PQIKVIAPWRMP<EFYNWFKAFNDLMEEYTK>QHGILILVTSKNP*SMEQ |
Parental | NLMHISYEAGILENPKNQAPPGLYTKTQDP |
NLMHIS.EAGILE.PKN..PPGLYTK...P | |
Retrocopy | NLMHISCEAGILESPKN*GPPGLYTKPPTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |