RetrogeneDB ID: | retro_pabe_731 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:103792217..103793187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 85.49 % |
Parental protein coverage: | 89.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVE |
MSSKGS.VLA.SG.LDT.CILVWLKEQGYDVIAYLA.IGQKEDF.EARKKALK.GAKKVFIEDVS.EFVE | |
Retrocopy | MSSKGSMVLACSGSLDTFCILVWLKEQGYDVIAYLASIGQKEDFQEARKKALKPGAKKVFIEDVSKEFVE |
Parental | EFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCYSLAP-QI |
.FIW.AIQSS.LYED.YLLGTSLAR.CIARKQVE.AQ.EGAKYVSHG..GK.NDQV.FE..CYSLAP.QI | |
Retrocopy | *FIWLAIQSSTLYEDCYLLGTSLARACIARKQVEVAQREGAKYVSHGTMGKENDQVWFEFTCYSLAP>QI |
Parental | KVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTK |
KVIAP..MPEFYN.FKG..DL.EYAKQ.GIP.PVTPKNPWSMDENLMHISYEAGILENP.NQAPPGLYTK | |
Retrocopy | KVIAP*SMPEFYNWFKGHSDLTEYAKQRGIPTPVTPKNPWSMDENLMHISYEAGILENPENQAPPGLYTK |
Parental | TQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSR |
TQDPAK.PNTPDILEIEFKKGVPVKVTNVKD..THQTSLELFMYL.E..GKHGVG.I.IVENRFIGMKSR | |
Retrocopy | TQDPAKTPNTPDILEIEFKKGVPVKVTNVKDSATHQTSLELFMYLSEITGKHGVGSIAIVENRFIGMKSR |
Parental | GIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
GIY..PAGTILY.AHL.IEAFTM.REV.KIKQ..GLKFAELVYT | |
Retrocopy | GIYGAPAGTILYYAHLRIEAFTMHREVHKIKQRRGLKFAELVYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 45 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .09 RPM |
SRP007412_heart | 0 .00 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .03 RPM | 673 .87 RPM |
SRP007412_liver | 0 .03 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_820 |
Pan troglodytes | retro_ptro_571 |
Gorilla gorilla | retro_ggor_671 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |