RetrogeneDB ID: | retro_nleu_1701 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397305.1:12824281..12825087(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.07 % |
Parental protein coverage: | 61.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDP |
PWRMPEFYN.FKGR.DLMEYAKQHGIPI.VTPKN.WSMD..LMHISYEAGILENPKNQ.PPGLYTK.QDP | |
Retrocopy | PWRMPEFYNWFKGRSDLMEYAKQHGIPILVTPKNLWSMDKYLMHISYEAGILENPKNQVPPGLYTKIQDP |
Parental | AKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGM-KSRGIY |
AKAPNTPDIL.I.FKKGVPVKVTNVKDGTTHQTS.ELF.YLNEVAGKHGVG.I.IVEN.F.G..K.RGIY | |
Retrocopy | AKAPNTPDILKIQFKKGVPVKVTNVKDGTTHQTSSELFVYLNEVAGKHGVGCIAIVENNFTGQ<KARGIY |
Parental | ETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQVS |
.TP.GTILYHAHLDI..FT.DREV.K.KQGLGLK.AEL.YT.F.HSPECE.V..CIAKSQE..EGKVQV. | |
Retrocopy | QTPGGTILYHAHLDIKVFTTDREVHKTKQGLGLKLAELIYTSF*HSPECEIVCPCIAKSQEPAEGKVQVL |
Parental | VLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
VLK.QVYILG.ESPLSLY.EELVSMNVQGDYE..D.TGFININSLRLKEYHRLQSKVTA. | |
Retrocopy | VLKDQVYILGWESPLSLYSEELVSMNVQGDYELIDDTGFININSLRLKEYHRLQSKVTAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |