RetrogeneDB ID: | retro_nleu_625 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397268.1:31117617..31118914(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSNLEG00000012500 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | RVVHCTVKTDSRRWELTPPIPDAMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEA |
.VVH..VKTDSR.WELTP.IPDA.SSKGSVVLAYSG.LDTSCI.VWLKEQG.D..AYL.NIGQKEDF.E. | |
Retrocopy | QVVH*AVKTDSRLWELTPLIPDAVSSKGSVVLAYSGSLDTSCIFVWLKEQGNDITAYLGNIGQKEDFKEV |
Parental | RKKALKLGAKKVFIED-VSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSH |
R...L..G.K.......VSREFVEEFIW.AIQSS.LYED..LLG.SL.RP.IARKQVEI.Q.EGAK.VSH | |
Retrocopy | RH*SL--GPKRCSLRVCVSREFVEEFIWLAIQSSTLYED-HLLGSSLPRPSIARKQVEITQQEGAKCVSH |
Parental | GATGKGNDQVRF-ELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENL |
G..GKGNDQVRF..L.CYSLAPQIKVIAP..M.EFYNRFKG.N.LMEYAK.HGIPIPVTPKNPWSM.ENL | |
Retrocopy | GTKGKGNDQVRF<QLTCYSLAPQIKVIAP*TMSEFYNRFKGPNNLMEYAKPHGIPIPVTPKNPWSMHENL |
Parental | MHISYEAGILENPKNQAPPGLYTKTQDPAKAP-NTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYL |
MHISYEAGILE.PKNQAPPG..TKTQDPAKAP.NTPDIL.IEF.KGVPVKVTN.KDGT.HQTSLELFMYL | |
Retrocopy | MHISYEAGILESPKNQAPPGRCTKTQDPAKAP<NTPDILKIEFTKGVPVKVTNIKDGTIHQTSLELFMYL |
Parental | NEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTG |
NEVAGKH..G.IDI.E.RFIG.KS.GIYETPAGT.LYHAHLDIEAFTMD.EV.KIKQGL.LK.AELVYTG | |
Retrocopy | NEVAGKHHAGSIDIMEKRFIGTKSPGIYETPAGTTLYHAHLDIEAFTMDQEVCKIKQGLDLKLAELVYTG |
Parental | FWHSPECEFVRHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFINI |
FWHSPECE.VRHCI.KSQERVEGKVQVSVLKGQVYIL...SPL.LYNEELV.MNV..D.EP.DATGFINI | |
Retrocopy | FWHSPECECVRHCITKSQERVEGKVQVSVLKGQVYILR*DSPLALYNEELVNMNVPDD*EPIDATGFINI |
Parental | NSLRLKEYHRLQSKVTAK |
.SLRLKEYHR.Q.KVTAK | |
Retrocopy | SSLRLKEYHRIQNKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |