RetrogeneDB ID: | retro_pabe_1963 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:72929189..72929922(+) | ||
Located in intron of: | ENSPPYG00000012478 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPPYG00000019692 | ||
Aliases: | None | ||
Description: | argininosuccinate synthase [Source:RefSeq peptide;Acc:NP_001126812] |
Percent Identity: | 80.57 % |
Parental protein coverage: | 68.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SSALYEDRYLLGTSLARPCIARKQVEIAQQEGAKYVSHGATGKGNDQVRFELSCYSLAPQIKVIAPWRMP |
SS.LYED.YL.G.SL.RP....KQVEIAQ.E.AKYVSH.A.GK.NDQV.FEL.CYSLAPQIKVIAP.R.P | |
Retrocopy | SSGLYEDCYLRGPSLPRPYVTHKQVEIAQWEEAKYVSHSAMGKRNDQVWFELACYSLAPQIKVIAPGRIP |
Parental | EFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPN |
EFYN.FKGR.DLMEYA..HGIPI.VT.K.PW.MDENLMHIS.EAGILENPK.QAP.GLY.K.QDPAKAPN | |
Retrocopy | EFYNQFKGRSDLMEYAEKHGIPIAVTLKHPWNMDENLMHISHEAGILENPKKQAPSGLYMKIQDPAKAPN |
Parental | TPDILEIE-FKKG-VPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPA |
TPDI..IE..KKG.VPVKVT..KDGTTHQTSLELFMYLNEVAGKH.VG.IDIVENRFI.MKS.GI..TPA | |
Retrocopy | TPDIFKIE<VKKG<VPVKVTSIKDGTTHQTSLELFMYLNEVAGKHSVGHIDIVENRFIEMKS*GICKTPA |
Parental | GTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYT |
GTILYH.HLDIEAFTM..EV.KIKQGLGLKFAELVYT | |
Retrocopy | GTILYHSHLDIEAFTMEQEVHKIKQGLGLKFAELVYT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .44 RPM | 45 .84 RPM |
SRP007412_cerebellum | 1 .34 RPM | 1 .09 RPM |
SRP007412_heart | 0 .18 RPM | 5 .81 RPM |
SRP007412_kidney | 0 .63 RPM | 673 .87 RPM |
SRP007412_liver | 1 .19 RPM | 332 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2247 |
Pan troglodytes | retro_ptro_1590 |
Gorilla gorilla | retro_ggor_1675 |
Callithrix jacchus | retro_cjac_1219 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |