RetrogeneDB ID: | retro_ptro_2199 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:146034867..146035672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSPTRG00000021473 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.72 % |
Parental protein coverage: | 65.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | APWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYTKTQD |
APWRMPEFYN.FKGR.DLMEYAKQHGIPI.VTPKN.WSMD.NLMHISYEAGILENPKN..PPGLYTK.QD | |
Retrocopy | APWRMPEFYNWFKGRRDLMEYAKQHGIPILVTPKNLWSMDKNLMHISYEAGILENPKNKVPPGLYTKIQD |
Parental | PAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRID-IVENRFIGM-KSRG |
PAKAPNTPDI..I.FKKGVPVKVT.VKDGTTHQTSLELFMYLNEVAGKHGVG....IVEN.F....K.RG | |
Retrocopy | PAKAPNTPDI-KIQFKKGVPVKVTSVKDGTTHQTSLELFMYLNEVAGKHGVGFLP<IVENIFTRQ<KARG |
Parental | IYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGKVQ |
IY.TP.GTILYHAHLDI..FT..REV.K..QGLGLKF.EL.YT.F.HSPECEFVR.CIAKSQE..EGK.Q | |
Retrocopy | IYQTPVGTILYHAHLDIKIFTTVREVHKTNQGLGLKFSELIYTSF*HSPECEFVRPCIAKSQEPAEGKGQ |
Parental | VSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
V.VLKGQVYILG.ESPLSL.NEEL.SMNVQGDYEP.D.TGFININSLRLKEYH.LQSKVTA. | |
Retrocopy | VPVLKGQVYILGWESPLSLSNEELMSMNVQGDYEPIDDTGFININSLRLKEYHCLQSKVTAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .09 RPM | 42 .11 RPM |
SRP007412_cerebellum | 0 .07 RPM | 48 .83 RPM |
SRP007412_heart | 0 .00 RPM | 16 .26 RPM |
SRP007412_kidney | 0 .24 RPM | 1168 .07 RPM |
SRP007412_liver | 0 .03 RPM | 933 .12 RPM |
SRP007412_testis | 0 .00 RPM | 18 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3252 |
Pongo abelii | retro_pabe_2696 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |