Parental gene:

CDC42, ENSTSYG00000000679

Aliases:None
Description:cell division cycle 42 [Source:HGNC Symbol;Acc:1736]
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_10543:19253..32136(-)


>ENSTSYG00000000679
ATGCAGACAATTAAGTGTGTGGTTGTGGGCGATGGTGCTGTTGGTAAAACATGCCTCCTGATATCCTATACAACAAACAA
ATTTCCATCTGAGTATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTTGTCGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAAAAACTTGCCAAGAACAAAC
AGAAGCCTATTACTCCAGAGACGGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTC
ACACAGAGAGGTCTGAAGAATGTGTTTGATGAGGCTATCCTAGCTGCCCTCGAGCCTCCGGAAACTCAACCCAAAAGGAA
GTGCTGTATATTCTAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 possible_ortholog 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000005912 possible_ortholog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Dipodomys ordii ENSDORG00000010374 ortholog_one2one 3 retrogenes
retro_dord_17, retro_dord_464, retro_dord_552,
Equus caballus ENSECAG00000019180 ortholog_one2one 1 retrogene
retro_ecab_11,
Echinops telfairi ENSETEG00000004443 possible_ortholog 1 retrogene
retro_etel_2010,
Felis catus ENSFCAG00000004853 possible_ortholog 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Macaca mulatta ENSMMUG00000022009 possible_ortholog 8 retrogenes
retro_mmul_1449, retro_mmul_1612, retro_mmul_1685, retro_mmul_1900, retro_mmul_1932, retro_mmul_24, retro_mmul_349, retro_mmul_598,
Monodelphis domestica ENSMODG00000016078 possible_ortholog 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 ortholog_one2one 1 retrogene
retro_ogar_131,
Sorex araneus ENSSARG00000005184 possible_ortholog 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Ictidomys tridecemlineatus ENSSTOG00000000805 possible_ortholog 4 retrogenes
retro_itri_1158, retro_itri_1602, retro_itri_1615, retro_itri_431,
Tarsius syrichta ENSTSYG00000001618 other_paralog 2 retrogenes
retro_tsyr_2027, retro_tsyr_2068,
Tarsius syrichta ENSTSYG00000002837 within_species_paralog 1 retrogene
retro_tsyr_1609,
Tursiops truncatus ENSTTRG00000005708 ortholog_one2one 2 retrogenes
retro_ttru_118, retro_ttru_54,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_66 63.06 58.12
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2. retro_tsyr_352 63.85 68.06
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3. retro_tsyr_387 66.41 68.59
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4. retro_tsyr_539 68.46 74.87
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5. retro_tsyr_963 82.54 98.95
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6. retro_tsyr_1575 87.83 98.95
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7. retro_tsyr_1597 88.54 99.48
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8. retro_tsyr_1854 68.95 99.48
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9. retro_tsyr_1976 66.41 68.59
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10. retro_tsyr_2048 79.66 60.73
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11. retro_tsyr_2098 90.00 99.48
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Download FASTA sequences of all ENSTSYG00000000679 retrocopies