RetrogeneDB ID: | retro_dord_464 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_203026:3..563(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42 | ||
Ensembl ID: | ENSDORG00000010374 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211] |
Percent Identity: | 88.36 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY |
TIKCVVVGDGAVGKTCLLIS.TTNKFPSEYVPTVFDNYAV.VMIGGEPY.LGLFD.AGQ.DYDRLRPLSY | |
Retrocopy | TIKCVVVGDGAVGKTCLLISNTTNKFPSEYVPTVFDNYAVIVMIGGEPYILGLFDIAGQ-DYDRLRPLSY |
Parental | PQTDVFLVCFSVVSPSSFENVKEKW-VPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPET |
PQTD.FLVCFSV.S.SSFENVKEKW.VPEITHH.PKTPFLLVG.QIDLRDDPST.EK.AKNKQKPITPET | |
Retrocopy | PQTDIFLVCFSVISTSSFENVKEKW<VPEITHHSPKTPFLLVGPQIDLRDDPSTTEKFAKNKQKPITPET |
Parental | AEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCI |
AEKLA.DLKAVKYVECSALTQ.GLKNVFDEAILAALEPPE....R.C.. | |
Retrocopy | AEKLAHDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000010374 | 3 retrocopies |
retro_dord_17, retro_dord_464 , retro_dord_552,
|
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tursiops truncatus | ENSTTRG00000005708 | 2 retrocopies |