RetrogeneDB ID: | retro_dord_552 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_31125:9222..9514(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42 | ||
Ensembl ID: | ENSDORG00000010374 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211] |
Percent Identity: | 52. % |
Parental protein coverage: | 50.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | TVMIGGEP-YTLGLFDTAGQEDYDRL-RPLSYPQTDVFLVC-FSVV-SPSSFENVKEKWVPEITHHCPKT |
.VMIG.EP..TL....T.GQE.YD.L...L.YP.TD.FL.C.FS.V.S.SSFENVK.K.....T.H.PK. | |
Retrocopy | SVMIGEEP>VTLRFCGTEGQEHYDSL>KTLGYPPTDIFLAC>FSSV>SLSSFENVKAK*ALRLTSHYPKI |
Parental | PFLLVGTQIDLRDDPSTIEKLAKNKQKPIT |
.FL..GTQ..L..DP.TI.K.A.......T | |
Retrocopy | SFLIAGTQTELSNDP*TIKKFARSRCQWLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000010374 | 3 retrocopies |
retro_dord_17, retro_dord_464, retro_dord_552 ,
|
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000679 | 11 retrocopies | |
Tursiops truncatus | ENSTTRG00000005708 | 2 retrocopies |