RetrogeneDB ID:

retro_tsyr_1078

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_298828:825..1500(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSTSYG00000013466
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_tsyr_1078
CTGGTCGAGGACATGGAGATCAAGTTGCTGGAGGAGATCTTTTTCTTTTTCCTGCCCATCAAGGAGTCTGAGATCATCGG
GTTCTTCCTCGGTACATCTCTGAAGGTTGAGGTTTTGCAGATCATGCCCGTGCAAAAGCAGACCCACACTGGCCAGCGAG
CCAGGTTCAAGGTGTTTGTTGCCATTGGGATCTGCAGTGGCCATGTCTGTCTGGGTGTTAAGTGCTCCAAGGGAGTAGCC
ACTGCCATCTGAGAGGCCATCATCTTGGCCATGCTCTTCTTCATCCTTGTGTGGAGAGGCTACTACGGGAACAATATTGG
CAAGCCCTACACTGTCCCTTGCAAGGTGACCGGCTGCTGTGGCTCTGTGCTGGTGCCCCTAATCCCTGCTCCCAAGGGCA
TTGTCATCATCTTGGCCCCCGTGGCCAAGACACAGCTGATGATGGTTGGCATCGATGACTGCTATACCTCGGCCAGAGGC
TGCACTGCTACCCTGGGCAACTTCGCCAAGACCACCTTTGATGCCATCTCTAAGGCCTGTAGCTCCTTGACTCCTGACCT
CTGGAAAGAGACTGTGTTTGCCAAGTCTTTCTATCAGGAATTCACTGACCACCTCGTCAAGACCCTCACCAGAGTCTCCG
TGCATAGGACCCAGGCTCCAGTGGTGGCTGCAACA

ORF - retro_tsyr_1078 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG
LV.DM.IK.LEE...F.LPIKESEII.FFLG.SLK.EVL.IMPVQKQT..GQR.RFK.FVAIG...GHV.
RetrocopyLVEDMEIKLLEEIFFFFLPIKESEIIGFFLGTSLKVEVLQIMPVQKQTHTGQRARFKVFVAIGICSGHVC
ParentalLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVSAP
LGVKCSK.VATAI..AIILA.L....V.RGY.GN.IGKP...PCKVTG.CGSVLV.LIPAP.G..I..AP
RetrocopyLGVKCSKGVATAI*EAIILAMLFFILVWRGYYGNNIGKPYTVPCKVTGCCGSVLVPLIPAPKGIVIILAP
ParentalVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT
V.K..LMM.GIDDCYTSARGCTATLGNFAK.TFDAISK..S.LTPDLWKETVF.KS.YQEFTDHLVKT.T
RetrocopyVAKTQLMMVGIDDCYTSARGCTATLGNFAKTTFDAISKACSSLTPDLWKETVFAKSFYQEFTDHLVKTLT
ParentalRVSMQRTQAPAVSTT
RVS..RTQAP.V..T
RetrocopyRVSVHRTQAPVVAAT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1078 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 67 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Felis catus ENSFCAG000000291916 retrocopies
Macropus eugenii ENSMEUG000000045082 retrocopies
Monodelphis domestica ENSMODG000000160771 retrocopy
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tarsius syrichta ENSTSYG00000013466 52 retrocopies



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