RetrogeneDB ID: | retro_tsyr_1498 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_46683:13210..13877(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 86.22 % |
Parental protein coverage: | 99.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGL |
VKDMKIKSLEE..LFSLPIKES.IIDFFLGA.LKDEVL.IMPVQKQT.AGQ.TRFKA.VAIGDYNGHVGL | |
Retrocopy | VKDMKIKSLEEIFLFSLPIKESDIIDFFLGAPLKDEVLQIMPVQKQTHAGQQTRFKALVAIGDYNGHVGL |
Parental | GVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKI-GKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVS-A |
GV.CS.E.ATAIRGAI.LAKLSIVPV.RGY.G.K..GKPH..PCKVTG.CGSVLVRLIPAPRGTG.VS.A | |
Retrocopy | GVQCSQEAATAIRGAITLAKLSIVPVWRGYQGEKM<GKPHTVPCKVTGCCGSVLVRLIPAPRGTGMVS<A |
Parental | PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH |
.VPK.LLMMAG.DDCYTSARGCTATLGNFA.ATFD.ISKTYSY.TPDLWKETVFTKSPYQEFTDHLVKT. | |
Retrocopy | LVPKTLLMMAGTDDCYTSARGCTATLGNFAQATFDTISKTYSYWTPDLWKETVFTKSPYQEFTDHLVKTR |
Parental | TRVSMQRTQAPAVST |
TRV.MQRTQAPAV.T | |
Retrocopy | TRVYMQRTQAPAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |