RetrogeneDB ID: | retro_tsyr_131 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_3526:79164..79834(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 87.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
LVKDMKIKSLEE.YLFSLPIK.SEIIDFFLGASLKDEVLK.....KQTRAGQ.TRFKAFVAIGDYNGHVG | |
Retrocopy | LVKDMKIKSLEEIYLFSLPIKKSEIIDFFLGASLKDEVLKTCA--KQTRAGQQTRFKAFVAIGDYNGHVG |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPA-PRGTGIVSA |
LGVKCSKE.ATA..GAIILAKLSI.PV.RGYW.NKIGKPH..PCKVT.RC.SVLV.LIPA..RGTGIVS. | |
Retrocopy | LGVKCSKELATAVWGAIILAKLSIIPVWRGYWRNKIGKPHTVPCKVTDRCSSVLVHLIPA>SRGTGIVSV |
Parental | PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH |
PV.KKLLMMAGIDDCYTSARGCTATLG.FAKATFDAI.KTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH | |
Retrocopy | PVSKKLLMMAGIDDCYTSARGCTATLGYFAKATFDAIYKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH |
Parental | TRVSMQRTQAPAVSTT |
TR..MQRTQAPAV.TT | |
Retrocopy | TRAAMQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |