RetrogeneDB ID: | retro_tsyr_1317 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_394609:181..856(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 75.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
LV.DM.IK.LEE...F.LP.KESEII.FFLG.SLK.EVL.IM..QKQT..GQRTRFK.FVA.G.Y.GH.G | |
Retrocopy | LVEDMEIKLLEEISFFFLPVKESEIIGFFLGTSLKVEVLQIMLMQKQTHTGQRTRFKVFVATGIYSGHIG |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVSAP |
LGVKCSK.VATAI.GAIILA.L...PV.RGY.GN.IGKP...PCKVTGRCGSVLV.LIPAP.G..IV.AP | |
Retrocopy | LGVKCSKGVATAI*GAIILAMLFFIPVWRGY*GNNIGKPYTVPCKVTGRCGSVLVPLIPAPKGIVIVLAP |
Parental | VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT |
..K.LLMM.GIDDCYTSARGCTATLGNFAK.TFDAI.K..S.LTPDLWKETVF.KS.YQEFTDHLVKT.T | |
Retrocopy | MAKTLLMMVGIDDCYTSARGCTATLGNFAKTTFDAIFKACSSLTPDLWKETVFAKSFYQEFTDHLVKTLT |
Parental | RVSMQRTQAPAVSTT |
RVS..RTQAP.V..T | |
Retrocopy | RVSVHRTQAPVVAAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |