RetrogeneDB ID: | retro_tsyr_609 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_148852:174..845(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 91.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LVKDMKIKSLEENYLFSLPIKESEIIDF-FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHV |
LVKDMKIKSLEE..LFSLPIKESEI.DF.FLGASLK.EVLKIMPVQKQTRAGQ.TRFKAFVA.GDYNGHV | |
Retrocopy | LVKDMKIKSLEEISLFSLPIKESEI-DF<FLGASLKEEVLKIMPVQKQTRAGQPTRFKAFVAAGDYNGHV |
Parental | GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIP-APRGTGIVS |
GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPH..PCKVTGRCGSVLVRL.P.AP.GTGIV. | |
Retrocopy | GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLFP>APSGTGIVL |
Parental | A-PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK |
A.P.PKKLLMMAGIDDCYTSARGCTATL.NFAKATFDAISKTYSYLTPDLWKE.VFT.SPYQEFTDHLVK | |
Retrocopy | A<PMPKKLLMMAGIDDCYTSARGCTATLDNFAKATFDAISKTYSYLTPDLWKEMVFTRSPYQEFTDHLVK |
Parental | THTRVSMQRTQAPAVSTT |
THTRVSMQR.QAPAV.TT | |
Retrocopy | THTRVSMQRNQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |