RetrogeneDB ID: | retro_tsyr_527 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_133422:836..1510(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 89.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
LVKDMKIKSLEE.YLFSLPIKESEIIDFFLGA.LKDEVLK.MPVQKQT.AGQ.T.FKAFVAIG.YNGH.G | |
Retrocopy | LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGACLKDEVLKNMPVQKQTCAGQQTKFKAFVAIGAYNGHIG |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPH-NSPCKVTGRCGSVLVRLIPAPRGTGIVSA |
LG.KCSKE.ATAIRGAIILAKLSIVPVRRG..GNKIGKPH...PCKVTGRCGS..VRLIPAPRGTGIVSA | |
Retrocopy | LGIKCSKEEATAIRGAIILAKLSIVPVRRG**GNKIGKPH<HCPCKVTGRCGSDQVRLIPAPRGTGIVSA |
Parental | PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH |
.VPKKL.MMAGIDDCYTSARGCTATLGNFAKATFDAISKTY..LTPD.WKETVFTKSPYQEFTDHLVKTH | |
Retrocopy | LVPKKLYMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYGCLTPDFWKETVFTKSPYQEFTDHLVKTH |
Parental | TRVSMQRTQAPAVSTT |
TRVSMQRTQAPAV.TT | |
Retrocopy | TRVSMQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |