RetrogeneDB ID: | retro_tsyr_1478 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_458901:314..985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000019512 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LVKDMKIKSLEENYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG |
LVKDMKIKSLEE.YLFSLPIKESEIIDFFLGASLKDEVLKI.PVQKQTR.GQRTRFKAFVAIGDYNGHVG | |
Retrocopy | LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIIPVQKQTRTGQRTRFKAFVAIGDYNGHVG |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVSA- |
LGVKCSKEVATAI.G.IILAKLSI.PV.RGYW.NKIGK.H...CKVTGRCGSVLV.LIPAP.GTGIVSA. | |
Retrocopy | LGVKCSKEVATAIWGTIILAKLSIIPVQRGYWSNKIGKAHTVLCKVTGRCGSVLVCLIPAPSGTGIVSA< |
Parental | PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTH |
PVPKKL.MMA..DDCYTSARGCTATLGNFAKATFDAI.KTYSYL.P.LWKETVFT.SPYQEFTDHL.KTH | |
Retrocopy | PVPKKLPMMAEMDDCYTSARGCTATLGNFAKATFDAITKTYSYLPPNLWKETVFTRSPYQEFTDHLIKTH |
Parental | TRVSMQRTQAPAVST |
TRVSMQRTQAP.V.T | |
Retrocopy | TRVSMQRTQAPTVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |