RetrogeneDB ID: | retro_tsyr_1301 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_386585:852..1379(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 65. % |
Parental protein coverage: | 78.22 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGH-VGLGVKCSK-EVATAIRGAIILAKLSIVPVRRGYW |
KDE.LKIMPVQKQT..GQ.TRFKAFVAI.DYN...V.L.VK.SK.....A...AII.A.L.IV....GY. | |
Retrocopy | KDEILKIMPVQKQTHDGQWTRFKAFVAIKDYNDQ<VSLDVKHSKAKCSIATLWAIIQA*LPIVLMQGGY* |
Parental | GNKIGKPHNSPCKVTGRCGSVLVRLI-PAPRGTGIVSAPVPKKLLMMAG-IDDCYTSARGCTATLGNFAK |
G.K..KPH..PCKVTG.CGSVL..L..P.PR.TGIV.APV..K.L......DD.YTS..GCTATL.NF.K | |
Retrocopy | GSKTSKPHMLPCKVTGHCGSVLRCLT<PGPRNTGIVLAPV-LKKLLLMS>VDDRYTSPKGCTATLANFTK |
Parental | ATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHT |
ATFDAISK.YS.LTP.LW.ETVF...P.QEFTDH.VKTHT | |
Retrocopy | ATFDAISKAYSHLTPNLWRETVFANFPSQEFTDHFVKTHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |