RetrogeneDB ID: | retro_tsyr_415 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_113069:542..1215(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 75.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | LVKDMKIKSLEENYLFS-LPIKESEIIDFFLGASLKDEV-LKIMPVQKQTRAGQRTRFKAFVAIGDYNGH |
L.KDMKIK.LE....FS.LPIKE.EI.DFFLGASLKDE..LKIMPVQK..RAGQ..RF..FVAIGDY..H | |
Retrocopy | LAKDMKIKLLE*TSPFS<LPIKEAEITDFFLGASLKDEL>LKIMPVQKLARAGQ*SRFNVFVAIGDYSDH |
Parental | VGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVS |
VGLGV..SKE.ATAIRGAIILAKLS.VPV.RG.WG.K...PH..PCKVTG.CG.VLV.LIPAPRGTGIV. | |
Retrocopy | VGLGVNYSKEEATAIRGAIILAKLSSVPVWRGCWGHKVS*PHTVPCKVTGLCGFVLVCLIPAPRGTGIVL |
Parental | APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKT-YSYLT-PDLWKETVFTKSPYQEFTDHLV |
AP.PKKLL.MAGIDDC..SARG..ATL.NFAKA.FDA.SKT..SYLT.PD.WKETVFT.SPYQEFT.HLV | |
Retrocopy | APMPKKLLLMAGIDDCHPSARGSPATLSNFAKAIFDAVSKT<LSYLT<PDFWKETVFTQSPYQEFTGHLV |
Parental | KTHTRVSMQRTQAPAVSTT |
KTHTRVS..RTQ.P.V.TT | |
Retrocopy | KTHTRVSVPRTQVPTVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |