RetrogeneDB ID: | retro_cfam_2009 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:46866057..46866599(-) | ||
Located in intron of: | ENSCAFG00000019305 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 96.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEV-GATSALAPKIGPLG-LSP-KKVGDDIA |
RCNCLR.S.IR.HPTPA.S.MPPKF.P.EIKV.....T.GEV....SALAPKIG.LG.LSP..KVGDDI. | |
Retrocopy | RCNCLRWSQIRAHPTPATSTMPPKFKPSEIKVIHIWYTDGEVVPPLSALAPKIGSLG<LSP<LKVGDDII |
Parental | KATGDWKGLRITVKLTIQN-RQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM |
KA.GDWKGLR.TVKLTIQN..QAQIE..PS.SAL..K......R..K...NIKHSGN.TFD.IV..A... | |
Retrocopy | KAAGDWKGLRMTVKLTIQN<QQAQIEEEPSVSALLSKG---TART*KEVENIKHSGNTTFDKIVYTAQKT |
Parental | RHRSLARELSGTIKEILGTAQSVGCNVDGR-HPHDIIDDINSGAVECPA |
.H.SLA.ELSGTI.EILGT.Q..GCN.D...HPHDI.D.INSG.VECPA | |
Retrocopy | GHQSLAKELSGTIEEILGTVQPMGCNADVA<HPHDITDNINSGTVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |