RetrogeneDB ID: | retro_itri_445 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393292.1:8647177..8647420(+) | ||
Located in intron of: | ENSSTOG00000005652 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSSTOG00000027425 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 52.94 % |
Parental protein coverage: | 51.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPH |
L....L.EP........NI..SGN..F..IVN.ARQ......AREL..T..EILGT.QS.GCNVDG.HPH | |
Retrocopy | LPLPSLTEPSVNYQETENIRFSGNSPFHVIVNTARQ---QCCARELQ-TLNEILGTSQSPGCNVDGHHPH |
Parental | DIIDDINSGAVECPA |
.IIDDI..G....PA | |
Retrocopy | EIIDDISNGDTG*PA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |