RetrogeneDB ID: | retro_cpor_954 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_36:20604095..20604460(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.38 % |
Parental protein coverage: | 64.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FRLSARRRQRCNFLRSSRIRV-HPTPAASTMPPKFDPNEIKVVYL-RCTGGEVGATSALAPKIGP-LGLS |
FRL.A.....C.F..SSRI.V.HPTPA..TMPPK.DPN.IKV.YL..CTGGE........PKI.P.LGL. | |
Retrocopy | FRLLAKEEAKCSFPLSSRI*V<HPTPATCTMPPKLDPNRIKVIYL<ECTGGEISTMVCPSPKISP<LGLC |
Parental | PKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDR-KKQKN |
.K.VG.D.AKATGD.KGLRITVKL.IQ....Q.EVVPSASAL.IKALK.PPRDR..KQK. | |
Retrocopy | SKNVGGDFAKATGDCKGLRITVKLAIQD---QNEVVPSASALTIKALKMPPRDR<NKQKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .00 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |