RetrogeneDB ID: | retro_cpor_1514 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_91:220381..220924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.75 % |
Parental protein coverage: | 93.85 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | RQRCNFLRSSRIRVHPTPAASTMPP-KFDPNEIKVVYLRCTG-GEVGATSALAPKIG-PLGLSPKKVGDD |
R..C.FL.SS.I..H.T.A..T....K.DP.EIKV..LRCT..GE..ATSALAPKI...LGL.PKK.GDD | |
Retrocopy | RLSCTFLESS*IWFHQTSASFTTSS<KIDPSEIKVMHLRCTV<GELNATSALAPKIS<LLGLVPKKLGDD |
Parental | IAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQ |
I..AT...K.LRI.VKL.IQNR.A.IEVVPSASAL.IK..KE..RDRKK.KNIKH....TFD..VN.A.Q | |
Retrocopy | IVEATDG*KDLRIIVKLKIQNRKALIEVVPSASALTIKGSKELTRDRKKEKNIKHRRSVTFDKTVNYAQQ |
Parental | MRHRSLARELSGTIKEILGTAQSVGCNVDNRHPHDIIDDINSGAVE |
.....LAR.L.G.I.EIL.T..S.GCNVD..H.H.IID.IN..A.E | |
Retrocopy | V*C*FLARKLPG-ITEILRTM*SGGCNVDSQHLHEIIDNINNSAME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .00 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 242 .39 RPM |