RetrogeneDB ID: | retro_fcat_1276 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:70938530..70938829(+) | ||
Located in intron of: | ENSFCAG00000029889 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.35 % |
Parental protein coverage: | 52.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTI-KEI |
IQNRQA.IEVVPSASALIIK.LKEPPRD.K.Q.N.KHSG.I.F.EIVN.A..M.H.SLARELSGTI.KEI | |
Retrocopy | IQNRQAHIEVVPSASALIIKVLKEPPRDTK-QNNVKHSGTIIFYEIVNAA*RMWH*SLARELSGTI<KEI |
Parental | LGTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
LGTAQSVGCNVDG.HPHDIIDDINSG.VEC.A | |
Retrocopy | LGTAQSVGCNVDGHHPHDIIDDINSGTVECSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .10 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |