RetrogeneDB ID: | retro_cfam_1470 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:19880514..19880994(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 76.83 % |
Parental protein coverage: | 97.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | FDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTI-QNRQAQIEV |
F..NEIK.VYLRC.GGEV.ATSALAPKI.PLGLSPKKVG.DIAKATG.WKGLR.TVKLTI..NR.A..EV | |
Retrocopy | FSMNEIKAVYLRCPGGEVSATSALAPKITPLGLSPKKVGVDIAKATGNWKGLRMTVKLTI<LNREALTEV |
Parental | VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNV |
VPS.S.L.IKALK.PPRDRKKQK..KHSGNITF.EIVNIA.QM...SLARELSG.IKEILGTAQSVGC.V | |
Retrocopy | VPSSSVLVIKALKKPPRDRKKQKTGKHSGNITFNEIVNIA*QM*Y*SLARELSGNIKEILGTAQSVGCSV |
Parental | DGRHP-HDIIDDINS-GAVECPAS |
D.R...HDI.D...S...VECPAS | |
Retrocopy | DSRDS<HDITDSVSS<CVVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |