RetrogeneDB - Parental gene ENSSTOG00000027425 details

							
>ENSSTOG00000027425
GCTCGGAGGAGGTTAAGGTGCAACTCTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCCGCCTCCACCATGCC

GCCCAAGTTCGACCCCAATGAAATCAAAGTCCCCAAAAAGGTTGGTGATGATATTGCCAAAGCAACTGGTGATTGGAAGG

GTCTGAGGATTACAGTGAAACTGACTATTCAGAACAGACAAGCCCAGATTGAAGTGGTACCTTCTGCCTCTGCCCTGATC

ATAAAAGCCCTCAAGGAGCCACCAAGAGACAGAAAGAAACAGAAAAACATTAAACACAGTGGAAATATCACTTTTGATGA

AATTGTCAACATTGCCCGACAGATGCGTCACCGATCTTTAGCTAGAGAACTTTCTGGAACCATTAAGGAGATTCTGGGGA

CTGCCCAGTCTGTGGGTTGTAATGTTGATGGCCGCCACCCTCATGACATCATAGATGACATCAATAGTGGTGCAGTGGAG

TGTCCAGCTGTA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016712	ortholog_one2many	15 retrogenes	retro_amel_1131, retro_amel_1172, retro_amel_1208, retro_amel_1400, retro_amel_1508, retro_amel_1558, retro_amel_17, retro_amel_174, retro_amel_1856, retro_amel_203, retro_amel_260, retro_amel_293, retro_amel_688, retro_amel_876, retro_amel_952,
Canis familiaris	ENSCAFG00000020136	ortholog_one2one	31 retrogenes	retro_cfam_1016, retro_cfam_1139, retro_cfam_1141, retro_cfam_1143, retro_cfam_1151, retro_cfam_1166, retro_cfam_1181, retro_cfam_1203, retro_cfam_1257, retro_cfam_1470, retro_cfam_1484, retro_cfam_1558, retro_cfam_1591, retro_cfam_1597, retro_cfam_1632, retro_cfam_1796, retro_cfam_1880, retro_cfam_1986, retro_cfam_2009, retro_cfam_2094, retro_cfam_2194, retro_cfam_437, retro_cfam_588, retro_cfam_706, retro_cfam_728, retro_cfam_748, retro_cfam_759, retro_cfam_76, retro_cfam_850, retro_cfam_950, retro_cfam_955,
Cavia porcellus	ENSCPOG00000013769	ortholog_one2one	18 retrogenes	retro_cpor_1, retro_cpor_1069, retro_cpor_1108, retro_cpor_1373, retro_cpor_140, retro_cpor_1473, retro_cpor_1510, retro_cpor_1513, retro_cpor_1514, retro_cpor_313, retro_cpor_342, retro_cpor_553, retro_cpor_556, retro_cpor_664, retro_cpor_874, retro_cpor_910, retro_cpor_921, retro_cpor_954,
Equus caballus	ENSECAG00000010622	ortholog_one2many	17 retrogenes	retro_ecab_1024, retro_ecab_1027, retro_ecab_1119, retro_ecab_157, retro_ecab_335, retro_ecab_379, retro_ecab_457, retro_ecab_475, retro_ecab_605, retro_ecab_666, retro_ecab_679, retro_ecab_699, retro_ecab_708, retro_ecab_843, retro_ecab_895, retro_ecab_967, retro_ecab_973,
Echinops telfairi	ENSETEG00000006941	ortholog_one2one	7 retrogenes	retro_etel_1508, retro_etel_1714, retro_etel_318, retro_etel_345, retro_etel_750, retro_etel_919, retro_etel_983,
Felis catus	ENSFCAG00000010302	ortholog_one2many	31 retrogenes	retro_fcat_1078, retro_fcat_1115, retro_fcat_1118, retro_fcat_1149, retro_fcat_1206, retro_fcat_1276, retro_fcat_1288, retro_fcat_1298, retro_fcat_1376, retro_fcat_1482, retro_fcat_1527, retro_fcat_1637, retro_fcat_1638, retro_fcat_1676, retro_fcat_1854, retro_fcat_1873, retro_fcat_1977, retro_fcat_2009, retro_fcat_302, retro_fcat_35, retro_fcat_352, retro_fcat_359, retro_fcat_415, retro_fcat_455, retro_fcat_502, retro_fcat_509, retro_fcat_53, retro_fcat_638, retro_fcat_767, retro_fcat_819, retro_fcat_902,
Latimeria chalumnae	ENSLACG00000015373	ortholog_one2many	3 retrogenes	retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii	ENSMEUG00000007380	possible_ortholog	12 retrogenes	retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Myotis lucifugus	ENSMLUG00000009551	ortholog_one2one	2 retrogenes	retro_mluc_1222, retro_mluc_1797,
Myotis lucifugus	ENSMLUG00000013404	possible_ortholog	1 retrogene	retro_mluc_14,
Monodelphis domestica	ENSMODG00000004571	possible_ortholog	9 retrogenes	retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mustela putorius furo	ENSMPUG00000013832	ortholog_one2many	34 retrogenes	retro_mputfur_1102, retro_mputfur_1104, retro_mputfur_1137, retro_mputfur_1192, retro_mputfur_1223, retro_mputfur_1283, retro_mputfur_1329, retro_mputfur_1467, retro_mputfur_1526, retro_mputfur_1580, retro_mputfur_260, retro_mputfur_331, retro_mputfur_363, retro_mputfur_445, retro_mputfur_489, retro_mputfur_500, retro_mputfur_508, retro_mputfur_521, retro_mputfur_533, retro_mputfur_534, retro_mputfur_544, retro_mputfur_559, retro_mputfur_594, retro_mputfur_61, retro_mputfur_622, retro_mputfur_632, retro_mputfur_651, retro_mputfur_824, retro_mputfur_828, retro_mputfur_843, retro_mputfur_868, retro_mputfur_884, retro_mputfur_913, retro_mputfur_977,
Rattus norvegicus	ENSRNOG00000016220	possible_ortholog	4 retrogenes	retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii	ENSSHAG00000017864	possible_ortholog	8 retrogenes	retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_itri_445	52.94	51.83	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_itri_790	56.16	86.59	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_itri_833	88.89	76.83	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_itri_840	77.17	76.83	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_itri_1128	60.92	51.83	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_itri_1197	97.62	76.83	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_itri_1498	79.31	86.59	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSTOG00000027425 retrocopies

Parental gene:	RPL12, ENSSTOG00000027425
Aliases:	None
Description:	ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:	*Squirrel (Ictidomys tridecemlineatus)*
Coordinates:	JH393297.1:15177487..15180922(-)

Parental gene:

RPL12, ENSSTOG00000027425