RetrogeneDB ID: | retro_fcat_767 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:82462985..82463554(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.02 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SARRRRRCNALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGGEVGATSALAPKIG-PLGL-SPKKV |
S...R.RCN...SS.I.V...P..ST.PPKF.P...KV.YLRCT..EV..T.ALAPKIG.P.GL.....V | |
Retrocopy | SPQSR*RCNSPQSS*IQVPLPPATSTRPPKFNPKKVKVIYLRCTLREVRTTLALAPKIG<PPGLICLQRV |
Parental | GDDIA-KATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVN |
GDDI..KAT..WKGLRIT.KL.IQNR.AQIEV.PSASAL.I.ALKEPPRDRKKQKNIKHSGNITFDEIVN | |
Retrocopy | GDDIT<KATCNWKGLRITEKLNIQNR*AQIEVIPSASALMIRALKEPPRDRKKQKNIKHSGNITFDEIVN |
Parental | IARQMRHRSLARELSGTI-KEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP |
IA.QM.H.S.AREL.GT..KEILGTAQSV.CNV.G.HPH.IIDDINSG.VECP | |
Retrocopy | IALQMQHQSSARELCGTV>KEILGTAQSVDCNVAGHHPHNIIDDINSGIVECP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .10 RPM | 219 .37 RPM |