RetrogeneDB ID: | retro_ecab_843 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 5:72531403..72531889(+) | ||
Located in intron of: | ENSECAG00000014397 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.71 % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGD-DIAKATGDWKGLRITVKLTIQNRQA |
MPPKF.P.EI.V.YLRCT.GEV.ATS.LAPKIGPLGLSPK..G..DIAKATGDWKGLRITVKLTIQNR.A | |
Retrocopy | MPPKFNPKEIQV-YLRCTSGEVSATSTLAPKIGPLGLSPKR-GE>DIAKATGDWKGLRITVKLTIQNRPA |
Parental | QIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS-LARELSGTIKEILGTAQS |
Q.E.V.SASALIIKALKEPPRDRKKQKNIK.S.N.TFD..VNI..QM.H...LARE.SG.IKEILGTAQS | |
Retrocopy | QTEEVTSASALIIKALKEPPRDRKKQKNIKYSENRTFDDSVNIS*QMLHGN<LARERSGAIKEILGTAQS |
Parental | VGCNVDGRHPHDVIDDINNGAVECPA |
VGC.V.G.H.HD.I.DI...AVECPA | |
Retrocopy | VGCSVYGCHTHDIIHDIHSSAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .53 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .16 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .46 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .38 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .41 RPM | 253 .74 RPM |
SRP021940_testis | 0 .32 RPM | 48 .98 RPM |