RetrogeneDB ID: | retro_fcat_1078 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:19516275..19516812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010302 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.66 % |
Parental protein coverage: | 97.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RRRRCNALRSSRIRVHPTPTASTMPPKFDPNEIKVEYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIA |
RR.RCN.L.SSR.R..PTP.AS.M.P.F.PN.IKV.Y.RCT....G......P..GPLGLSP.KVGDDIA | |
Retrocopy | RR*RCNCLWSSRVRINPTPGASAMQPQFNPNKIKVIYVRCT---IGEVVCPGP-VGPLGLSPEKVGDDIA |
Parental | KATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNI-KHSGNITFDEIVNIARQM |
KAT.D.KG.RITVKLTIQNRQAQIE..PSASALIIKAL.EPPRDRKKQKNI.KHSGNITFDEIVN....M | |
Retrocopy | KATSDRKGVRITVKLTIQNRQAQIEELPSASALIIKALREPPRDRKKQKNI>KHSGNITFDEIVNTGCHM |
Parental | RHRSLARELSGTIKEIL-GTAQSVGCNVDGRHPHDIIDDINSGAVECPA |
.HRSLARELSGTIKEIL.GTAQSVGCNVDG.HP....DD.NSGAVECPA | |
Retrocopy | QHRSLARELSGTIKEIL<GTAQSVGCNVDGCHP----DDVNSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 96 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 388 .12 RPM |
SRP017611_liver | 0 .00 RPM | 219 .37 RPM |