RetrogeneDB ID: | retro_ecab_1119 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:69634484..69634970(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.78 % |
Parental protein coverage: | 98.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KFDPNEIKVVYLRCTGGEV-GATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE |
KF.P.EIKV.YL.CT.G...G..SAL.PKIGPLGLSP.KV.DD.AKAT.DWKGL.ITVKL..QNRQA.IE | |
Retrocopy | KFNPKEIKVMYLKCTSGKI>GTMSALTPKIGPLGLSPEKVCDDMAKATSDWKGLKITVKLNLQNRQA*IE |
Parental | VVPSASALIIKALKEPPRDRKKQKNIKHSG-NITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGC |
V.P.ASALI.KALKEPP.DRKK.K..KHSG.NITF.E.VNIA.Q..H...ARELSGTIKEILGT.QSV.C | |
Retrocopy | VGPFASALIVKALKEPPSDRKKWKDVKHSG<NITFYETVNIA*QVQH*L*ARELSGTIKEILGTSQSVAC |
Parental | NVDGRHPHDVIDDINNGAVECPAS |
NVDG.HP.D.IDD.NN.AVE.PAS | |
Retrocopy | NVDGHHPQDIIDDFNNAAVEFPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .03 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .05 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .08 RPM | 253 .74 RPM |
SRP021940_testis | 0 .00 RPM | 48 .98 RPM |