RetrogeneDB ID: | retro_ecab_967 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 8:24456221..24456550(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000010622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.83 % |
Parental protein coverage: | 67.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GLRITVKLTIQNRQAQIEVVPSASALIIKALKE-PPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLAR |
GLR...KLTIQNRQAQ.E.V.SASALII..L.E..P.DRKK.K.IKH....TFDEIVNI..QM.H.SLAR | |
Retrocopy | GLRTAAKLTIQNRQAQTEGVASASALIIEVLEE<MPGDRKK*KSIKHRASVTFDEIVNIGQQMQHQSLAR |
Parental | ELSGTIK-EILG-TAQSVGCNVDGR-HPHDVIDDINNGAVECPAS |
ELSGT.K.E..G.TAQSV.CNVD...H.HD..DDIN.GAVEC.A. | |
Retrocopy | ELSGTVK<EVWG<TAQSVDCNVDAA<HHHDILDDINPGAVECTAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .35 RPM | 374 .78 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .55 RPM |
SRP021940_embryo | 0 .13 RPM | 157 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 118 .31 RPM |
SRP021940_synovial_membrane | 0 .41 RPM | 253 .74 RPM |
SRP021940_testis | 0 .13 RPM | 48 .98 RPM |