RetrogeneDB ID: | retro_cfam_1632 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 38:8269105..8269666(-) | ||
Located in intron of: | ENSCAFG00000010624 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 67.37 % |
Parental protein coverage: | 98.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RRQRCNCLRSSRIRVHPTPAASAMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIA |
R.....CL.SS.I..H.TP..S...PKFD...IKVVY..CT..E.GAT..LA.KIGPL.LSPK.V..DI. | |
Retrocopy | RGTKVQCL*SSSIQAHLTPVTSTTLPKFD-SKIKVVYRKCTSWEIGATTTLA*KIGPLSLSPKRVDYDIS |
Parental | KATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMR |
KAT.DWK...I..KLT.QNRQAQIEVV.SASALI.KALKEPPRDRKKQKNIKH.GNITFDEIVNIA.QMR | |
Retrocopy | KATSDWKHRKISMKLTSQNRQAQIEVVLSASALIMKALKEPPRDRKKQKNIKHGGNITFDEIVNIAQQMR |
Parental | HRSLARELS-GTIKEI-LGTAQSVGCNVDGR-HPHDIIDDINSGAVECPA |
...LAR..S.G..K...L..AQSV.C.VD...HPHDIID.INSGAVEC.A | |
Retrocopy | C*FLARAFS>GELKRSWLEAAQSVCCSVDAA<HPHDIIDEINSGAVECSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |