RetrogeneDB ID: | retro_cpor_910 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_33:18553076..18553392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.11 % |
Parental protein coverage: | 54.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AFRLSARRRQRCNFLRSSRIRVHPTPAASTMPPKFDPNEIKVVYLRCTGGEVG-ATSALAPKIGPLGLSP |
.FRLSA.RRQRCNFL..SRI.VHPTPAASTMPPKFDPNEIKV.YLRCT.GEVG...SALA.KIGPLGLSP | |
Retrocopy | SFRLSAKRRQRCNFLWLSRIWVHPTPAASTMPPKFDPNEIKVTYLRCTSGEVG<PMSALASKIGPLGLSP |
Parental | -KKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPS |
.KKVGDDIAKATGDWK.LRITVKLTIQ.RQA.IEVVPS | |
Retrocopy | <KKVGDDIAKATGDWKVLRITVKLTIQIRQA*IEVVPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .04 RPM | 146 .95 RPM |
SRP040447_lung | 0 .03 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 242 .39 RPM |