RetrogeneDB ID: | retro_cfam_850 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 19:29325796..29326188(+) | ||
Located in intron of: | ENSCAFG00000004821 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCAFG00000020136 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L12 [Source:UniProtKB/Swiss-Prot;Acc:E2RR58] |
Percent Identity: | 70.37 % |
Parental protein coverage: | 80.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GPLGLSPKKVGDDIAKATGDWKGLRITV-KLTIQNRQAQIEV-VPSASALIIKALKEPPRDRKKQKNIKH |
GP.G..P.KV....AKATG.WKG.R.TV.KLTI.NR.AQ.EV.V.SASAL...ALK.PPRDRK.QKN..H | |
Retrocopy | GPEGRPPRKVA---AKATGGWKGPRLTVEKLTIRNRRAQTEV<VASASALTP*ALKKPPRDRKEQKNFRH |
Parental | SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS |
SGN.T..EIVN.A.QMRHRS.ARELSGT..EI..TAQSVGC.VDG.HPHDI.DD.NSGA.E.PAS | |
Retrocopy | SGNSTSGEIVNNA*QMRHRSAARELSGTVNEIPETAQSVGCRVDGHHPHDITDDVNSGAGEWPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 305 .54 RPM |
SRP017611_brain | 0 .00 RPM | 91 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 791 .32 RPM |
SRP017611_liver | 0 .00 RPM | 227 .18 RPM |