RetrogeneDB ID: | retro_cpor_1 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_24:14102645..14103143(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023886 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSCPOG00000013769 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.89 % |
Parental protein coverage: | 83.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIE |
PKFDP.EI.VVYLRCT.GEV.ATSALAPKIGPLG.SP.KVGDDIAKATGDWKGLRIT..L.IQNRQAQIE | |
Retrocopy | PKFDPIEIQVVYLRCTSGEVSATSALAPKIGPLGPSPEKVGDDIAKATGDWKGLRITMTLAIQNRQAQIE |
Parental | VVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCN |
VVPSASALI.KALKEPPRDRKKQKNIKHSGN.TFDEIVNIARQM.H.SLARELS.TIKEILGTAQSVGC. | |
Retrocopy | VVPSASALIVKALKEPPRDRKKQKNIKHSGNTTFDEIVNIARQMQHQSLARELSRTIKEILGTAQSVGCS |
Parental | VDNRHPHDIIDDINSGAVECPA |
VD.R.PH.IIDDINSGAVECPA | |
Retrocopy | VDSRRPHNIIDDINSGAVECPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 83 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 202 .78 RPM |
SRP017611_liver | 0 .00 RPM | 146 .95 RPM |
SRP040447_lung | 0 .08 RPM | 273 .72 RPM |
SRP040447_skeletal_muscle | 0 .09 RPM | 242 .39 RPM |